OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4714/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    29
Turtle            27
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 56 6082.403509 20523.387941 0.0 177.0 1234.0 2777.0 124680.0
Declaration 56 1203.842105 3303.537081 0.0 90.0 419.0 885.0 22818.0
SubClassOf 54 1538.508772 4468.668678 0.0 23.0 344.0 1108.0 24611.0
ObjectPropertyRange 51 35.929825 36.570802 0.0 13.0 25.0 53.0 150.0
ObjectPropertyDomain 50 33.666667 36.381576 0.0 9.0 22.0 45.0 148.0
DataPropertyRange 45 12.912281 18.696142 0.0 1.0 5.0 20.0 97.0
SubObjectPropertyOf 44 52.964912 67.884609 0.0 2.0 26.0 72.0 284.0
DataPropertyDomain 41 12.543860 32.897064 0.0 0.0 2.0 8.0 235.0
InverseObjectProperties 41 12.543860 26.206645 0.0 0.0 2.0 11.0 126.0
DisjointClasses 40 236.210526 1624.315018 0.0 0.0 4.0 21.0 12277.0
ClassAssertion 38 128.842105 376.674205 0.0 0.0 3.0 26.0 1952.0
EquivalentClasses 35 157.070175 812.585641 0.0 0.0 7.0 66.0 6147.0
TransitiveObjectProperty 31 4.122807 6.606464 0.0 0.0 1.0 6.0 32.0
SubDataPropertyOf 29 6.754386 11.922788 0.0 0.0 1.0 10.0 63.0
SubAnnotationPropertyOf 28 13.035088 33.790830 0.0 0.0 0.0 14.0 228.0
FunctionalObjectProperty 25 2.596491 4.203993 0.0 0.0 0.0 4.0 17.0
FunctionalDataProperty 24 1.877193 4.031440 0.0 0.0 0.0 2.0 22.0
InverseFunctionalObjectProperty 22 1.754386 3.135515 0.0 0.0 0.0 1.0 12.0
IrrefexiveObjectProperty 20 3.245614 6.260080 0.0 0.0 0.0 1.0 22.0
SymmetricObjectProperty 20 3.263158 6.277870 0.0 0.0 0.0 6.0 35.0
AnnotationPropertyRangeOf 19 5.771930 18.670084 0.0 0.0 0.0 2.0 134.0
AsymmetricObjectProperty 18 2.666667 5.392897 0.0 0.0 0.0 1.0 20.0
ObjectPropertyAssertion 16 263.017544 1378.789978 0.0 0.0 0.0 2.0 10226.0
DataPropertyAssertion 14 109.456140 504.394477 0.0 0.0 0.0 0.0 3617.0
DisjointUnion 13 5.736842 17.354010 0.0 0.0 0.0 0.0 116.0
SubPropertyChainOf 10 3.175439 16.132402 0.0 0.0 0.0 0.0 120.0
AnnotationPropertyDomain 8 0.245614 0.871794 0.0 0.0 0.0 0.0 6.0
ReflexiveObjectProperty 8 0.175439 0.504367 0.0 0.0 0.0 0.0 3.0
EquivalentObjectProperties 7 1.157895 4.992099 0.0 0.0 0.0 0.0 36.0
DifferentIndividuals 6 0.333333 1.185227 0.0 0.0 0.0 0.0 6.0
DisjointObjectProperties 6 0.368421 1.396828 0.0 0.0 0.0 0.0 8.0
SameIndividual 3 0.543860 2.570924 0.0 0.0 0.0 0.0 17.0
Rule 3 0.649123 3.487177 0.0 0.0 0.0 0.0 25.0
EquivalentDataProperties 3 0.333333 1.550729 0.0 0.0 0.0 0.0 10.0
NegativeObjectPropertyAssertion 2 0.035088 0.185637 0.0 0.0 0.0 0.0 1.0
DatatypeDefinition 2 0.350877 2.517732 0.0 0.0 0.0 0.0 19.0
DisjointDataProperties 1 0.035088 0.264906 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 57 5284.315789 14247.761921 18.0 202.0 1218.0 4302.0 78469.0
ObjectUnionOf 40 15.175439 22.429352 0.0 0.0 5.0 14.0 88.0
ObjectAllValuesFrom 35 28.000000 60.569028 0.0 0.0 5.0 38.0 400.0
ObjectSomeValuesFrom 33 427.877193 2202.202834 0.0 0.0 7.0 118.0 16614.0
ObjectIntersectionOf 30 139.473684 823.835349 0.0 0.0 1.0 19.0 6217.0
ObjectExactCardinality 29 9.719298 26.140250 0.0 0.0 1.0 5.0 115.0
DataExactCardinality 22 2.491228 4.293362 0.0 0.0 0.0 3.0 18.0
DataHasValue 19 30.175439 77.090884 0.0 0.0 0.0 8.0 494.0
DataAllValuesFrom 17 0.947368 1.816797 0.0 0.0 0.0 1.0 8.0
ObjectComplementOf 16 5.087719 23.892827 0.0 0.0 0.0 1.0 179.0
ObjectHasValue 15 9.368421 32.860980 0.0 0.0 0.0 1.0 189.0
ObjectMinCardinality 14 1.438596 4.301235 0.0 0.0 0.0 0.0 28.0
DataSomeValuesFrom 13 1.385965 3.347464 0.0 0.0 0.0 0.0 17.0
ObjectOneOf 11 13.105263 54.673604 0.0 0.0 0.0 0.0 272.0
ObjectMaxCardinality 10 16.543860 118.371098 0.0 0.0 0.0 0.0 894.0
DataMaxCardinality 5 1.578947 8.387804 0.0 0.0 0.0 0.0 61.0
DataMinCardinality 4 0.298246 1.860923 0.0 0.0 0.0 0.0 14.0
ObjectHasSelf 1 0.017544 0.132453 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
17 FOAF 0.351 0.333 0.368
35 PATO 0.348 0.556 0.140
30 OBO 0.338 0.571 0.105
37 PROVO 0.314 0.504 0.123
19 IAO 0.300 0.600 0.000
22 MDO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
13 EMMO_crystallography 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
12 EMMO_atomistic 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
44 SP 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
28 NanoMine 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
52 mvc 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
54 opmw 0.200 0.400 0.000
55 periodictable 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
45 SSN 0.189 0.378 0.000
33 OSMO 0.189 0.378 0.000
48 bmo 0.189 0.378 0.000
39 QUDV 0.167 0.333 0.000
51 matinfo 0.167 0.333 0.000
53 ontorule 0.155 0.311 0.000
56 ssos 0.155 0.311 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 57.0 0.239298 0.043324 0.155 0.222 0.234 0.264 0.351
score_dash 57.0 0.465456 0.071766 0.311 0.438 0.467 0.504 0.600
score_impact 57.0 0.012912 0.055368 0.000 0.000 0.000 0.000 0.368

OBO dependency graph